* rseq 5.36 rsequence calculated from encoded sequences from: * encode 1.34; encoding of sequences in * * 1997/05/12 15:17:53, 1997/05/12 15:07:53, version = 2.01 of spliceD.in splice donor from -50 to 50 * * genomic probabilities from: * the composition file is empty. * (equal mononucleotides assumed) * the genomic composition used is: a = 1, c = 1, g = 1, t = 1 * * genomic information, hg: 2.00000 bits/base * * -50 50 is the range * * l position in aligned set * a..t number of each base at the position l * rs(l) rsequence(l) * rs rsequence, running sum of rs(l) * var(hnb) variance of hnb * sum-var running sum of var(hnb) * n(l) number of sequence examples at l * e(hnb) expectation of hnb * f flag for calculation of e(hnb) and var(hnb): * e = exact, a = approximation * * l a c g t rs(l) rs var(hnb) sum-var n(l) e(hnb) f -50 405 533 410 413 0.00903 0.00903 1.5101e-06 1.5101e-06 1761 1.99877 a -49 425 506 486 348 0.01321 0.02224 1.5033e-06 3.0134e-06 1765 1.99877 a -48 448 479 442 398 0.00189 0.02413 1.4999e-06 4.5133e-06 1767 1.99878 a -47 436 478 489 364 0.00793 0.03206 1.4999e-06 6.0132e-06 1767 1.99878 a -46 360 526 519 363 0.02286 0.05492 1.4982e-06 7.5114e-06 1768 1.99878 a -45 437 434 522 376 0.00867 0.06359 1.4965e-06 9.0079e-06 1769 1.99878 a -44 436 492 466 375 0.00592 0.06952 1.4965e-06 1.0504e-05 1769 1.99878 a -43 376 561 453 381 0.01873 0.08825 1.4931e-06 1.1997e-05 1771 1.99878 a -42 418 507 427 422 0.00360 0.09185 1.4881e-06 1.3486e-05 1774 1.99878 a -41 408 463 458 445 0.00050 0.09236 1.4881e-06 1.4974e-05 1774 1.99878 a -40 373 545 507 351 0.02436 0.11671 1.4847e-06 1.6458e-05 1776 1.99878 a -39 456 539 414 368 0.01308 0.12980 1.4831e-06 1.7941e-05 1777 1.99878 a -38 459 454 480 385 0.00356 0.13336 1.4814e-06 1.9423e-05 1778 1.99878 a -37 379 498 511 391 0.01199 0.14534 1.4797e-06 2.0903e-05 1779 1.99878 a -36 455 427 552 345 0.01874 0.16408 1.4797e-06 2.2382e-05 1779 1.99878 a -35 462 460 470 387 0.00301 0.16710 1.4797e-06 2.3862e-05 1779 1.99878 a -34 428 507 497 347 0.01425 0.18135 1.4797e-06 2.5342e-05 1779 1.99878 a -33 389 479 478 434 0.00387 0.18522 1.4781e-06 2.6820e-05 1780 1.99878 a -32 406 518 434 422 0.00542 0.19064 1.4781e-06 2.8298e-05 1780 1.99878 a -31 351 575 473 382 0.02603 0.21667 1.4764e-06 2.9774e-05 1781 1.99878 a -30 429 475 466 412 0.00123 0.21790 1.4747e-06 3.1249e-05 1782 1.99879 a -29 414 560 403 405 0.01395 0.23185 1.4747e-06 3.2724e-05 1782 1.99879 a -28 386 461 550 387 0.01484 0.24669 1.4714e-06 3.4195e-05 1784 1.99879 a -27 424 442 578 340 0.02479 0.27147 1.4714e-06 3.5667e-05 1784 1.99879 a -26 473 444 442 425 -0.00014 0.27133 1.4714e-06 3.7138e-05 1784 1.99879 a -25 400 515 523 346 0.01981 0.29114 1.4714e-06 3.8609e-05 1784 1.99879 a -24 419 503 495 368 0.01025 0.30139 1.4698e-06 4.0079e-05 1785 1.99879 a -23 448 511 423 403 0.00467 0.30606 1.4698e-06 4.1549e-05 1785 1.99879 a -22 393 528 509 355 0.01870 0.32476 1.4698e-06 4.3019e-05 1785 1.99879 a -21 460 448 515 362 0.00991 0.33467 1.4698e-06 4.4489e-05 1785 1.99879 a -20 393 543 446 403 0.01114 0.34581 1.4698e-06 4.5958e-05 1785 1.99879 a -19 395 477 506 409 0.00648 0.35229 1.4665e-06 4.7425e-05 1787 1.99879 a -18 413 420 582 373 0.02078 0.37307 1.4649e-06 4.8890e-05 1788 1.99879 a -17 478 468 480 362 0.00797 0.38104 1.4649e-06 5.0355e-05 1788 1.99879 a -16 412 542 448 386 0.01107 0.39211 1.4649e-06 5.1819e-05 1788 1.99879 a -15 465 492 461 370 0.00671 0.39882 1.4649e-06 5.3284e-05 1788 1.99879 a -14 453 513 438 384 0.00641 0.40523 1.4649e-06 5.4749e-05 1788 1.99879 a -13 399 527 493 369 0.01410 0.41933 1.4649e-06 5.6214e-05 1788 1.99879 a -12 424 503 449 412 0.00313 0.42246 1.4649e-06 5.7679e-05 1788 1.99879 a -11 452 559 392 385 0.01578 0.43824 1.4649e-06 5.9144e-05 1788 1.99879 a -10 401 508 496 383 0.00996 0.44821 1.4649e-06 6.0609e-05 1788 1.99879 a -9 481 444 497 371 0.00750 0.45571 1.4567e-06 6.2065e-05 1793 1.99879 a -8 461 461 453 422 -0.00027 0.45544 1.4502e-06 6.3516e-05 1797 1.99880 a -7 434 457 530 378 0.00935 0.46479 1.4470e-06 6.4963e-05 1799 1.99880 a -6 498 433 452 416 0.00210 0.46689 1.4470e-06 6.6410e-05 1799 1.99880 a -5 474 489 398 438 0.00326 0.47015 1.4470e-06 6.7857e-05 1799 1.99880 a -4 492 527 446 334 0.01852 0.48867 1.4470e-06 6.9304e-05 1799 1.99880 a -3 603 673 301 222 0.13550 0.62416 1.4470e-06 7.0751e-05 1799 1.99880 a -2 1071 263 219 246 0.38544 1.00960 1.4470e-06 7.2198e-05 1799 1.99880 a -1 169 85 1404 141 0.90316 1.91276 1.4470e-06 7.3645e-05 1799 1.99880 a 0 0 2 1789 8 1.94515 3.85791 1.4470e-06 7.5092e-05 1799 1.99880 a 1 8 10 6 1775 1.87585 5.73376 1.4470e-06 7.6539e-05 1799 1.99880 a 2 974 35 738 43 0.75382 6.48758 1.4616e-06 7.8000e-05 1790 1.99879 a 3 1274 152 215 149 0.68171 7.16929 1.4616e-06 7.9462e-05 1790 1.99879 a 4 128 95 1468 97 1.03982 8.20911 1.4649e-06 8.0927e-05 1788 1.99879 a 5 270 304 348 812 0.16303 8.37215 1.5575e-06 8.2484e-05 1734 1.99875 a 6 428 369 564 296 0.03861 8.41076 1.7056e-06 8.4190e-05 1657 1.99869 a 7 319 492 408 424 0.01526 8.42602 1.7348e-06 8.5925e-05 1643 1.99868 a 8 332 494 413 384 0.01358 8.43960 1.7778e-06 8.7702e-05 1623 1.99867 a 9 302 437 463 408 0.01618 8.45578 1.8067e-06 8.9509e-05 1610 1.99866 a 10 281 419 424 342 0.01779 8.47357 2.1790e-06 9.1688e-05 1466 1.99852 a 11 274 382 436 369 0.01761 8.49118 2.1940e-06 9.3882e-05 1461 1.99852 a 12 273 414 400 355 0.01603 8.50720 2.2522e-06 9.6134e-05 1442 1.99850 a 13 290 418 393 339 0.01235 8.51955 2.2584e-06 9.8393e-05 1440 1.99850 a 14 285 420 363 367 0.01180 8.53135 2.2742e-06 1.0067e-04 1435 1.99849 a 15 295 368 380 364 0.00516 8.53651 2.3656e-06 1.0303e-04 1407 1.99846 a 16 235 369 443 355 0.03274 8.56925 2.3825e-06 1.0542e-04 1402 1.99846 a 17 290 374 380 358 0.00629 8.57554 2.3825e-06 1.0780e-04 1402 1.99846 a 18 249 407 366 375 0.02102 8.59656 2.3996e-06 1.1020e-04 1397 1.99845 a 19 267 380 400 348 0.01436 8.61092 2.4065e-06 1.1260e-04 1395 1.99845 a 20 246 359 393 373 0.01984 8.63076 2.4915e-06 1.1510e-04 1371 1.99842 a 21 278 347 414 323 0.01330 8.64406 2.5245e-06 1.1762e-04 1362 1.99841 a 22 277 337 419 325 0.01447 8.65853 2.5394e-06 1.2016e-04 1358 1.99841 a 23 254 343 430 324 0.02326 8.68179 2.5658e-06 1.2272e-04 1351 1.99840 a 24 269 365 390 321 0.01218 8.69397 2.5887e-06 1.2531e-04 1345 1.99839 a 25 311 346 369 310 0.00235 8.69632 2.6237e-06 1.2794e-04 1336 1.99838 a 26 258 344 383 346 0.01265 8.70898 2.6435e-06 1.3058e-04 1331 1.99837 a 27 252 358 408 311 0.02040 8.72938 2.6514e-06 1.3323e-04 1329 1.99837 a 28 283 350 367 322 0.00514 8.73452 2.6796e-06 1.3591e-04 1322 1.99836 a 29 238 318 415 347 0.02570 8.76022 2.6959e-06 1.3861e-04 1318 1.99836 a 30 293 312 408 299 0.01232 8.77254 2.7206e-06 1.4133e-04 1312 1.99835 a 31 265 343 385 314 0.01137 8.78391 2.7415e-06 1.4407e-04 1307 1.99834 a 32 268 332 382 318 0.00965 8.79356 2.7711e-06 1.4684e-04 1300 1.99834 a 33 289 297 403 307 0.01225 8.80581 2.7882e-06 1.4963e-04 1296 1.99833 a 34 254 330 383 326 0.01317 8.81898 2.8011e-06 1.5243e-04 1293 1.99833 a 35 276 349 380 285 0.01141 8.83039 2.8142e-06 1.5524e-04 1290 1.99832 a 36 275 347 389 278 0.01426 8.84465 2.8186e-06 1.5806e-04 1289 1.99832 a 37 267 322 396 303 0.01342 8.85807 2.8229e-06 1.6089e-04 1288 1.99832 a 38 317 309 381 276 0.00827 8.86634 2.8450e-06 1.6373e-04 1283 1.99831 a 39 287 325 383 286 0.00902 8.87536 2.8539e-06 1.6658e-04 1281 1.99831 a 40 282 354 325 314 0.00304 8.87839 2.8808e-06 1.6947e-04 1275 1.99830 a 41 271 318 381 302 0.00956 8.88796 2.8944e-06 1.7236e-04 1272 1.99830 a 42 263 306 403 296 0.01709 8.90505 2.9127e-06 1.7527e-04 1268 1.99829 a 43 247 314 393 306 0.01776 8.92281 2.9498e-06 1.7822e-04 1260 1.99828 a 44 260 312 358 325 0.00756 8.93037 2.9733e-06 1.8120e-04 1255 1.99828 a 45 258 295 383 317 0.01324 8.94361 2.9828e-06 1.8418e-04 1253 1.99827 a 46 271 313 356 313 0.00493 8.94854 2.9828e-06 1.8716e-04 1253 1.99827 a 47 261 300 377 313 0.01095 8.95949 2.9924e-06 1.9015e-04 1251 1.99827 a 48 277 309 363 299 0.00554 8.96502 3.0068e-06 1.9316e-04 1248 1.99827 a 49 265 311 362 307 0.00704 8.97206 3.0213e-06 1.9618e-04 1245 1.99826 a 50 285 300 335 318 0.00091 8.97298 3.0556e-06 1.9924e-04 1238 1.99825 a * rsequence = 8.97298 +/- 0.01412 bits/site