evd 2.45 evolution of sites display * * 16 number of creatures * 128 number of potential binding sites, G * 8 number of sites per creature, gamma * 5 width of the recognizer in bases * 4 bases per integer of the recognizer * 1 mutation rate in hits per creature per generation * 0.300000000000 initial seed for the random number generator (given in evp) * 1000 cycles * 1 display interval * false : listing average mistakes * true : listing changes of mistakes * false : listing individuals * true : listing status to output * false : listing Rindividual orbits * true : listing Rsequence * true : listing genomic uncertainty * false : listing mistakes of best individual * 0.564638018608 current seed for the random number generator * true : selecting by mistakes * 1000 storage frequency * 0.00000 sigma, standard deviation of noise * No noise is modeled from version 3.78 of ev date-time stamp: 2005/03/23 17:59:02 1000 generation rfrequency = 4.00000 bits per site bpi = bases per integer recognizer gene area = (4 x width) x (2 x bpi) = 160 bits / recognizer gene recognizer accuracy = log2 (width x 4^bpi) = 10 bits recognizer gene effectiveness = accuracy/area = 6.3% maximum site information = 2 x width = 10 bits/site probable site density = rfrequency/(2*width) = 0.400 bits/site the creatures that rank from 1 to 1 are displayed creature of rank 1 makes 0 mistakes the w matrix is: L a c g t 1 58 -47 3 75 2 -112 105 19 -15 3 -117 -76 -103 -72 4 -61 12 -102 -68 5 33 -103 19 113 threshold = 112 matrix magnitude = 338.14346 sigma = 0.00000 width = 5 4 * width * sigma = 0.00000 Thermodynamic probabilities and information of weight matrix abs(largest weight): 117 normalization range: -1.00 to 1.00 normalization value: 117 L a c g t | p(a) p(c) p(g) p(t) | bits 1 58 -47 3 75 | 0.31 0.13 0.20 0.36 | 0.10 2 -112 105 19 -15 | 0.08 0.50 0.24 0.18 | 0.27 3 -117 -76 -103 -72 | 0.20 0.28 0.22 0.29 | 0.02 4 -61 12 -102 -68 | 0.22 0.41 0.16 0.21 | 0.10 5 33 -103 19 113 | 0.24 0.07 0.21 0.47 | 0.24 Thermodynamic Matrix Information = 0.74 bits a t g g t c a c a a a t c a g t g c a a c g g c a c a t 28 |a------ c------ g------ t------|a------ c------ g------ | 58 -47 3 75 |-112 105 19 t t a c g a g t g t c a g c g c g t g a t a a t a a t a 56 t------|a------ c------ g------ t------|a------ c------ -15 |-117 -76 -103 -72 |-61 12 g c g g g t t a a g a c g c g c a c a t c t a c c t a a 84 g------ t------|a------ c------ g------ t------|TTTTTTT -102 -68 | 33 -103 19 113 | 112 a t g g a t c c c a t c g t t t c c c a t g g c t t c c 112 (+++++++) (+++++++) (+++++++) (+++++++) (++++ 149 122 149 116 135 c g a c g c t t c t c t t c a c t t c g g g t t a 137 +++) (+++++++) (+++++++) (+++++++) 185 233 188