1997 Aug 25 This file contains the raw data from Table 1 of: @article{Barrick.ribosomes1994, author = "D. Barrick and K. Villanueba and J. Childs and R. Kalil and T. D. Schneider and C. E. Lawrence and L. Gold and G. D. Stormo", title = "Quantitative Analysis of Ribosome Binding Sites in {{\em E. coli.}}", journal = "Nucl. Acids Res.", volume = "22", pages = "1287-1295", comment = "1994 April 11. 22(7)", year = "1994"} * From daemon Mon Aug 9 12:00:40 1993 * Return-Path: * Received: by fcs280s.ncifcrf.gov (4.1/NCIFCRF-3.0/AWF-2.0) * * id AA29118; Mon, 9 Aug 93 12:00:39 EDT * Received: from boulder.Colorado.EDU by fcs280s.ncifcrf.gov (4.1/NCIFCRF-3.0/AWF-2.0) * * id AA29115; Mon, 9 Aug 93 12:00:37 EDT * Received: from beagle.Colorado.EDU by boulder.Colorado.EDU with SMTP id AA19275 * (5.65c/IDA-1.4.4 for ); Mon, 9 Aug 1993 10:00:39 -0600 * Received: by beagle.colorado.edu (cu.generic.890828) * Date: Mon, 9 Aug 93 10:00:37 -0600 * From: Gary Stormo * Message-Id: <9308091600.AA24778@beagle.colorado.edu> * To: toms@alum.mit.edu * Status: R * * des12 sequences: * des19 sequences: * name sequence act. s.d. # ln(act) 1217 CTGCCATTGTTA 88.7 14.9 4 4.48 1413 GCCGATCCCCCA 52.8 2.0 4 3.97 938 AAGAAAGAGTTG 51.4 4.0 4 3.94 1218 TATTTAAAGTCG 26.2 1.4 4 3.27 1420 TGACACCTATTG 3015.0 167.4 4 8.01 939 AGAACCCTAACA 597.4 75.4 7 6.39 1219 GGTTGAACAATG 88.9 0.7 4 4.49 1421 TGGTCGCCCCCT 532.0 51.1 4 6.28 942 AAAGTAGTATTG 39.9 1.9 8 3.69 1225 CATACCGAACAG 29.7 3.2 4 3.39 1423 TCTTGTATACAA 359.6 50.1 4 5.88 943 AGGGACAGGATA 601.4 22.4 4 6.40 1226 ACTTCGCAAGAA 95.7 5.2 4 4.56 1439 TTTTAAGTTATA 527.4 23.4 4 6.27 946 AAGGTGAATCCT 228.6 13.1 4 5.43 1227 TAAGTAATTTAA 187.9 26.9 4 5.24 1711 ATCCTTGCTGAT -0.2 1.3 4 0.00 947 GGAATATTAGAT 491.1 23.0 4 6.20 1228 CATAACCGAAAG 49.8 7.1 10 3.91 1716 TCTCCTAAAACT 3.8 1.4 4 1.32 965 GGAGGTTCTCTG 500.5 27.0 4 6.22 1231 AAACAGTGAGTG 181.1 25.6 4 5.20 1730 TCCTTCACTTGA 17.3 0.5 4 2.85 1081 GGGACATTCAAT 251.4 12.2 4 5.53 1232 GGCACTAACTCT 112.1 15.7 4 4.72 1801 ATTTCTCGACCA 280.6 53.1 12 5.64 1082 AGGAGTGGACAT 908.4 29.9 4 6.81 1234 TTCGAAATCTTT 44.7 8.5 4 3.80 1802 ACAAACTTCCAT 15.0 3.1 4 2.71 1096 GAAATTCAATTG 105.2 6.4 4 4.66 1235 TTAAATATTTTA 685.1 109.0 8 6.53 1803 TGTTAATCTTTA 1695.8 393.8 8 7.44 1097 AGGGATACCTCT 60.6 4.3 4 4.10 1237 TCATAATCGACC 26.6 2.2 4 3.28 1804 CTCGCTTTTCGA 14.3 5.3 4 2.66 1099 AGAGTCCCCATG 28.7 1.1 4 3.36 1238 TCTTAACGTTTA 343.8 14.2 4 5.84 1805 TCTTACTAACCT 126.5 160.5 4 4.84 1113 GAAGGTTCCTCA 597.2 67.6 4 6.39 1242 GAAGCAAAGATA 543.2 21.7 4 6.30 1806 CCGTCATCATAT 6.2 3.2 4 1.82 1119 GAGACCTGGTTT 24.1 1.6 4 3.18 1243 GTTGATATCTCA 393.0 38.3 8 5.97 1808 ATCTCCTTTTGC 1.5 1.1 4 0.38 1120 AGGGTTTTCAAA 115.3 4.8 4 4.75 1247 TTGAACTATTCA 223.0 75.6 8 5.41 1809 CTCCCAACTCCT 6.0 5.2 4 1.79 1124 AAAAATAAATTG 36.2 2.7 8 3.59 1248 TGATAGCTTGCT 910.3 107.1 4 6.81 1810 GTACTGTTTTAA 48.3 11.4 4 3.88 1125 GAGGCGCTTCTC 26.1 8.9 4 3.26 1249 ATAAACCGAGCA 249.3 27.3 8 5.52 1813 TAATTCACCGCC 0.5 0.4 4 0.00 1126 AGAAGTTATTAG 29.2 10.4 4 3.37 1250 TTGATTTCGACA 215.4 19.1 4 5.37 1815 CCCAAGTCCTAC 0.6 2.0 12 0.00 1127 GAGATTTCAGTG 274.2 25.5 4 5.61 1253 ATTAAACTCTTA 613.8 94.3 12 6.42 1816 CATAGCCATTAC 2.1 1.0 4 0.73 1128 AGAACCCGACAA 412.3 24.3 8 6.02 1256 CTGAATTGGATT 68.8 3.0 4 4.23 1817 CCTACTTTGTAG 4.3 3.2 8 1.47 1129 AAGGAATGAGAC 123.4 3.9 4 4.82 1257 TGGGCCTCGGCT 126.9 13.4 4 4.84 1818 CCTATTTCACAC 1.0 1.6 12 0.03 1131 AAAGTCCCTAGA 145.9 3.7 4 4.98 1260 ATTAATCTCTTA 564.7 113.3 8 6.34 1820 GATTCCTTACTC 2.6 2.2 4 0.95 1132 AAAACGACCTGT 21.6 5.8 4 3.07 1262 TTCGGTTGCCGA 76.4 4.9 4 4.34 1821 CCCCACCACTAC 0.7 2.1 8 0.00 1143 AAGGATACCTCT 60.3 1.6 4 4.10 1265 TTTAAATTATTA 875.2 187.2 16 6.77 1822 CCTACCCGGCCT 1.8 0.9 4 0.58 1154 GAAAGATTGAAA 478.8 59.9 12 6.17 1266 AGGTAGGATAGG 145.0 44.9 12 4.98 1828 TTTGCCGTCGCT -0.8 1.8 4 0.00 1167 GGGAGTCCACAA 1333.9 110.5 4 7.20 1267 TTAAACTTCTTA 691.7 95.6 4 6.54 1830 CACCCACTTCTT 2.2 0.3 4 0.80 1184 AAGAATAAACAT 32.4 2.6 4 3.48 1268 CTTTCAGTCGAA 92.7 46.6 8 4.53 1832 CTCTCCTAGAGA 37.8 15.7 12 3.63 1185 GAAAGTTCGAAT 26.5 2.3 4 3.28 1275 ATTAAACTATTA 667.1 43.1 4 6.50 1833 ACCGTCACCAGA 47.6 9.3 8 3.86 1186 GGGGCGCCTGAG 50.4 7.2 8 3.92 1276 ATTGAAATCTCA 293.8 144.9 12 5.68 1836 CGGAATGCAATG 28.3 4.2 8 3.34 1189 AAGAAAAAGCCT 24.0 2.3 4 3.18 1278 CCTAACTCATAG 19.9 3.4 4 2.99 1838 CACAACTTCCAA 156.5 22.9 4 5.05 1190 GAGAGGACCCAC 45.5 7.6 8 3.82 1283 AATTTCAGTGAA 74.9 2.4 4 4.32 1841 ACATTGTCCCCC 3.5 0.5 8 1.24 1193 AGGACAATTTTC 19.2 9.8 4 2.96 1284 AATATATAAAAA 348.1 27.4 4 5.85 1842 TGTCCTGGTCGT 159.1 20.1 8 5.07 1194 AGAGTATATGAT 34.3 2.2 4 3.53 1285 ATTTAGCCCCAA 118.5 7.9 4 4.77 1846 TGATATCCCTCT 182.2 27.4 4 5.21 1199 GGAGCCGGTTTT 32.7 2.0 4 3.49 1287 AGTTAGTTATTG 52.6 4.0 4 3.96 1853 CACTAACTATCT 26.8 4.7 4 3.29 1200 GGGGCATCCATG 48.8 3.1 4 3.89 1290 TCTCCAGAATGG 98.5 9.1 4 4.59 1862 AGATTTACCCTG 23.4 1.4 4 3.15 1201 AGAGTCTTCATG 71.1 24.8 12 4.26 1293 GTAACTTCATTA 825.7 111.8 12 6.72 1863 CCTACATTTAAC -1.1 0.5 4 0.00 1203 GAGACTTAGTCT 51.8 15.1 12 3.95 1295 TTAAATCATTTA 628.4 28.2 4 6.44 1864 ACCGCCGTATTG 8.0 2.0 8 2.08 1208 AGGAATTTATTG 670.5 93.3 8 6.51 1296 GTTATACTATAA 340.4 26.5 4 5.83 1866 GAACCATCACCC 6.2 1.4 4 1.82 1209 GGAAGAGTACTG 509.5 201.5 4 6.23 1300 ATCGAATCATCG 44.7 2.0 4 3.80 1869 AAGCCCCTTCCC -0.0 1.7 8 0.00 1426 GGAATAAATATG 43.7 6.7 8 3.78 1306 TTTAACCTTTAA 85.1 6.3 4 4.44 1870 TGTTTAAGTTAA 2122.3 353.1 8 7.66 1431 AAAAACAACTTG 23.2 7.9 8 3.15 1309 AGGGTGAAGCGG 94.8 10.0 4 4.55 1873 ATACAATTATGT 281.5 32.6 8 5.64 1434 GAAGAAACTTAG 103.9 34.5 4 4.64 1312 TGCCGTCCAGGA 111.5 14.0 4 4.71 1874 CTTTACTATTGT 4.5 3.9 8 1.51 1438 GAAATTTACCTG 69.6 10.9 8 4.24 1313 TCGAATCTCTCG 32.8 3.1 4 3.49 1875 ACAGACCCCTTG 27.9 68.2 12 3.33 1443 AGAGTCCGGTTA 353.5 41.4 4 5.87 1315 GTTTCTCTGAAA 316.0 171.8 8 5.76 1877 CCCATCCTTTCT 0.9 1.2 8 0.00 1450 GAAAATTATGTG 4.0 2.2 4 1.38 1316 TTTTCTATGGAA 35.8 4.3 4 3.58 1879 AAGGCGTCCCCT 8.7 0.6 4 2.17 1458 AAAGTCTCGCGG 0.5 0.6 4 0.00 1317 ACAGAATTCTCG 36.7 1.9 4 3.60 1881 CCCAAATGATTT 12.8 3.9 4 2.55 1462 GAAACTTCGTTT 30.8 18.2 4 3.43 1319 TAATTACATCGT 16.2 1.6 8 2.79 1884 AATACCGTCCAT 4.6 1.5 8 1.52 1464 AGAAACAAGGTG 9.2 1.5 8 2.22 1335 TATGTCTTTTAA 46.8 6.6 4 3.85 1885 TCTCCAAATCTG 10.9 5.0 8 2.39 1483 GAAACATGTCAT 1114.3 123.5 4 7.02 1336 GAGTTAATTTAG 124.3 16.3 4 4.82 1888 TCTAACGTTTCA 47.1 6.7 4 3.85 1485 AAAATAACGTTG 28.1 13.3 4 3.34 1340 TTGATATTCTCA 317.6 20.5 4 5.76 1892 ATACTTATCCCC 4.2 1.9 4 1.44 1487 AAGATTATCATG 10.9 0.4 4 2.39 1346 TGTCGCGACCAG 870.5 73.4 4 6.77 1894 TCCTCAATCACC -1.7 2.8 4 0.00 1489 AAAATTTACGAT 8.4 1.8 4 2.12 1362 CGTTGAGGCTCA 44.0 4.5 4 3.78 1895 CCACACTTTCAC 2.4 0.6 4 0.86 1491 AAAGTTACTGTG 12.5 1.5 4 2.52 1363 AATTGACATCGG 76.3 3.5 4 4.34 1896 CGGAACCTCCCA 186.1 32.5 8 5.23 1493 GAAGATTTACAA 588.2 37.2 4 6.38 1368 CGATGACCTTTT 1064.7 108.8 4 6.97 1897 CTAATCCATCTT 4.0 2.0 4 1.39 1499 GAAACGGTGGTT -0.5 1.0 4 0.00 1372 CTTGAAATATCA 744.4 87.7 8 6.61 1905 CATTGTCTTTCC 22.0 6.0 4 3.09 1502 GGAACAATAGTT 656.0 33.4 7 6.49 1378 CCAATACCATTG 48.5 19.5 12 3.88 1908 ACAGGAATTTCG 23.3 2.5 4 3.15 1509 GAAGACAACGAT 22.3 1.9 4 3.11 1381 TTAAATCTCTTA 585.7 100.0 8 6.37 1909 CGCGTTGCCCCT 1.8 0.5 4 0.58 1511 AAAATCGTATTT 36.4 2.1 4 3.60 1391 CCTTAGGCATAA 81.2 2.7 4 4.40 1910 TTACGCCGCAGT 4.2 1.1 4 1.43 1516 AAAATTATCGTG 6.9 0.5 4 1.93 1392 ATTAACTACTTA 667.3 29.7 4 6.50 1911 ATTACAACCCTT 5.2 1.9 4 1.65 c488 GAGGAGATACTG 1348.5 76.2 4 7.21 1396 TTTTTCAGAGAA 330.1 1.5 4 5.80 1912 CCCCTTATCCTT -1.8 2.4 4 0.00 c493 AGAATTGTAATT 23.8 1.2 4 3.17 c501 GGAGATACCCTG 3171.0 329.5 4 8.06 c551 AAAATAATACTC 1.8 0.6 4 0.61