Schneider Lab
origin: 2001 May 31
updated: 2001 June 11
These are the results of an E. coli genome scan using the two models. Note that Model 3 is on the left and Model 1 is on the right.
The date below the model name is when the scan was done. The columns list the strength of the walker in bits, the coordinate position in the genome of the walker. The regions which have been footprinted are labeled by name.
Model 3 Model 1
2001Jan09.18:51:38 2000Aug15.14:08:51
bits position name bits position name
29.319053 637851 dsbG 26.003543 890054 grxA
27.002242 890054 grxA 23.066328 637851 dsbG
26.029183 710103 fur 19.451017 638089 ahpC
22.961429 2467337 O16 19.066905 4131337 katG
21.802172 638089 ahpC 15.994386 2467337 O16
19.124647 4603357 fhuF.2 14.526879 710103 fur
18.257040 4603273 fhuF.1 13.937622 537879
17.994003 3666966 13.902829 4156029 oxyR
17.561130 4131337 katG 13.843331 2698016
17.398897 1762663 sufA 13.708360 1103699
17.334810 1475504 13.451616 77803
17.308212 2069355 flu 13.328488 576117
16.365522 2167805 13.188584 1524021
16.018299 3266461 13.088919 3266461
15.815227 3272480 12.714381 3406233
15.799885 1211333 12.439521 1485303
15.523548 2698016 12.358236 4071146
15.501646 1596260 12.310838 848228 dps
15.322310 4156029 oxyR 12.158836 502543
15.069787 1118367 11.813813 4603357 fhuF.2
14.944591 3728709 11.644263 3332953
14.918538 1994915 11.546151 234431
14.874270 2771647 11.451015 3947846
14.870517 4258085 11.416095 1596260
14.658079 2166305 11.188313 3643862 gorA
14.318329 1635419 10.995335 2271575
14.121559 3453098 10.907626 3593705
14.055865 4350518 10.323916 3749675
13.943103 2069377 10.194033 2521042
13.688402 4515863 10.105992 1415530
13.628378 1489550 9.918595 1994915
13.487644 3681853 9.901853 231012
13.334752 1544166 9.837484 1839528
13.248566 2244987 9.741871 1085734
13.246112 656380 9.574278 922026
13.154854 576117 9.532628 621434
13.136288 944478 9.451618 1762663
13.123600 848228 dps 9.421495 2069377
13.095937 578469 9.351479 3358678
13.084356 852932 9.333633 1489541
13.077641 4296460 9.329336 4302097
12.982277 1368411 9.311170 4550475
12.954409 1389982 9.222528 1408033
12.818226 77803 9.217730 656380
12.799185 611898 9.206235 1330089
12.628675 1103699 9.059875 156283
12.529726 502543 9.029956 297344
12.528242 3593705 9.018056 3983883
12.450230 2772602 8.994962 1675004
12.424173 2651659 8.978017 931365
12.298228 479548 8.947564 3630416
12.239617 2031613 8.902226 3531476
12.229096 3841565 8.877880 658175
12.217008 3630416 8.870925 3225447
12.176737 4324630 8.847587 533499
12.144058 1635963 8.779596 535444
12.103564 1493183 8.748296 2244987
12.095688 922026 8.638414 1771818
12.057429 3188563 8.632391 3681853
12.042572 4233311 8.584221 3728709
12.025494 2536606 8.579923 2823983
12.004722 480301 8.568097 3766821
11.974133 3767484 8.556830 1847718
11.868801 702971 8.556027 3666966
11.814642 569004 8.555952 1182772
11.727834 2319358 8.521031 2276485
11.694173 1168191 8.451346 3372533
11.624717 578812 8.426668 1307576
11.590410 3266070 8.416798 527920
11.586658 3332953 8.410603 1307096
11.579289 1211342 8.283117 944478
11.504388 2890067 8.270197 4576205
11.504320 645627 8.246169 4566311
11.453055 658175 8.181858 2108946
11.418465 1210395 8.181629 3579767
11.411415 2271575 8.157283 3272480
11.410721 2716640 trxC 8.100272 241909
11.404771 343562 8.052677 1591880
11.375150 3920674 8.047430 3235476
11.363324 3358678 8.037384 294313
11.362327 2510819 7.989138 2944573
11.293246 231012 7.913346 3714616
11.234266 1790014 7.889952 1702592
11.143020 3077235 7.836534 1635134
11.097093 3805948 7.832237 889205
11.057339 4258577 7.830887 3186334
11.055667 234431 7.761447 2479114
11.022887 3406233 7.756201 2873890
10.954410 3544212 7.748671 2284363
10.869346 2108946 7.714984 2311266
10.854178 2890135 7.702781 678935
10.794802 3983883 7.697307 3755850
10.767777 3749675 7.696127 4045004
10.766460 1489541 7.667387 2069355 flu
10.720354 2041060 7.666436 4296460
10.687077 996893 7.607790 1118367
10.684527 234101 7.579923 3188563
10.680634 1675004 7.578372 3901324
10.678116 1635134 7.497462 1870341
10.654151 1415530 7.468563 3834348
10.649326 2599144 7.467716 1648060
10.610282 2321377 7.467714 2166305
10.515684 1851197 7.456965 1486214
10.499979 621434 7.452192 275037
10.388804 2276485 7.449794 3983887
10.374165 1787617 7.434273 2597748
10.360050 3394392 7.322065 4230807
10.354619 331061 7.292917 1153970
10.349734 2467723 7.281565 3351897
10.349251 3358360 7.275071 2635787
10.323400 3767807 7.270197 570934
10.323217 2574040 7.228249 2492771
10.317375 4279637 7.200656 2890067
10.316914 497211 hemH 7.182132 570133
10.290150 656371 7.152409 2980448
10.258967 3694533 7.112345 4558459
10.240318 527920 7.099972 180362
10.233378 1687806 7.099670 2599144
10.119376 1524021 7.088777 3838088
10.073514 3497043 7.059875 2882272
10.041496 3579718 7.024481 2288220
10.011253 1080522 7.018285 659849
9.997503 2042880 6.995811 3694533
9.990801 2039282 6.995809 1199634
9.985232 2481780 6.989488 2813894
9.965756 1732364 6.988910 1489550
9.906627 3805690 6.941918 1475504
9.875347 2983670 6.941314 1211333
9.863250 3666944 6.923393 4258577
9.861488 1196867 6.884306 2321377
9.812792 4302097 6.866384 3134009
9.808349 1891871 6.853276 3755546
9.794079 2521042 6.839510 986246
9.765033 4045004 6.837815 535905
9.763713 733340 6.812964 2167805
9.762615 394212 6.801139 4258085
9.725163 3081965 6.795664 636134
9.724460 1940632 6.784769 2696427
9.705045 2032786 6.778346 3984863
9.695151 2254854 6.766218 656371
9.691374 2105805 6.764964 135459
9.682928 1085734 6.744602 702971
9.682333 645837 6.708802 4204814
9.677193 147840 6.678208 4327825
9.664466 2694157 6.673407 3580795
9.611110 3795826 6.661539 1248167
9.562712 2000790 6.655487 2105805
9.562334 2550277 6.632766 3673306
9.561279 1891889 6.619386 3265630
9.555415 3184076 6.613967 3723962
9.543311 3464677 6.596997 338208
9.518858 3764021 6.578745 651347
9.482332 1255074 6.554946 2940629
9.480571 4204814 6.550177 526775
9.473436 1899937 6.532525 538382
9.459780 4554170 6.519851 1901019
9.402280 4249975 6.504331 1159487
9.392179 565357 6.496757 1842428
9.388729 537879 6.457842 1226958
9.378999 1525666 6.428293 3256516
9.374643 2901911 6.416694 4388617
9.332326 3431234 6.397522 1883519
9.308955 3265630 6.363883 1488732
9.304757 1266398 6.339034 2771647
9.300866 3632049 6.334738 4341996
9.262952 617331 6.328386 2211927
9.239734 156283 6.315712 1095137
9.226529 678935 6.315638 134336
9.216367 1485303 6.298393 4238119
9.178461 1631203 6.282268 2246055
9.178461 1432141 6.275915 601694
9.166795 240279 6.262796 2195425
9.157665 2467674 6.240449 2738056
9.140331 2993829 6.218129 3714638
9.125505 3947846 6.211879 1056922
9.124882 2413033 6.158461 852932
9.116991 238116 6.146633 258340
9.110937 3372533 6.145786 2031635
9.086384 1168178 6.135337 4592686
9.081712 1570348 6.112343 4420609
9.071431 4162856 6.075999 3981884
9.068085 2031635 6.070524 2716640 trxC
9.046794 651283 6.035603 1894860
9.040872 3675909 6.030357 3309308
9.004021 841418 6.018284 1865330
8.978728 2052219 6.018056 1265260
8.976939 1388990 6.012809 2066269
8.971015 2066269 6.005609 4542252
8.967254 1330089 5.994115 4532136
8.907026 3903507 5.982889 1270374
8.899577 558541 5.982288 3649217
8.899433 4249395 5.965215 2057443
8.889021 4576205 5.959163 400463
8.874224 2468257 5.957942 175769
8.872137 1307096 5.953141 2984900
8.867474 446910 5.931194 4544717
8.859741 1408033 5.924573 2651659
8.846069 1307576 5.919325 3186712
8.845476 122999 5.913348 1214126
8.820181 2993165 5.866053 4576071
8.780737 3567368 5.837484 884986
8.769181 533499 5.835686 991743
8.749909 3225447 5.812362 645627
8.747958 4540215 5.809517 1827468
8.747510 2784053 5.802215 404578
8.736140 2040299 5.785821 2196254
8.725447 2389222 5.784066 569004
8.713643 42002 5.766848 3544212
8.705140 1645906 5.745553 3935765
8.689550 611905 5.743092 1570348
8.684414 2487802 5.706477 3453098
8.670978 3351897 5.701850 1614542
8.656923 4407806 5.679054 2110312
8.647243 1161843 5.672260 4576058
8.646505 1753212 5.666351 1368411
8.644799 538382 5.649136 3986699
8.636086 2980448 5.638817 1448230
8.624519 3309308 5.633343 229589
8.594347 582062 5.631215 1068127
8.583437 2241798 5.620192 3142117
8.515341 284339 5.591420 578812
8.504095 1811309 5.580256 3441651
8.484825 2784636 5.579925 154418
8.474675 2901839 5.578744 3192292
8.470331 3579767 5.567520 2772602
8.463137 2104592 5.567252 611905
8.458498 2108328 5.566919 4423391
8.422325 1030654 5.561672 2991690
8.414463 4577552 5.548997 3937478
8.383616 1147464 5.533104 3645339
8.368122 2053461 5.514377 2481396
8.348075 3266014 5.508282 1369724
8.342274 527911 5.503815 2198238
8.337261 4238119 5.503483 1802963
8.335447 1870341 5.497464 3328652
8.333436 2228579 5.479540 265993
8.331783 294313 5.478665 2940379
8.330129 1847718 5.467384 582066
8.324192 3411221 5.452193 2784347
8.318400 2882272 5.449765 3767807
8.305224 2284363 5.444663 569552
8.294112 1229743 5.409399 1424669
8.272047 3030959 5.404524 3505283
8.262000 3834348 5.402801 1877073
8.241127 2890089 5.397222 2570465
8.239090 1416711 5.380957 4409248
8.232685 2257647 5.349928 1635419
8.222042 2990063 5.341162 4567933
8.219158 4558459 5.340458 396055
8.215389 889205 5.328384 324393
8.214316 108290 5.326833 3898285
8.205681 1803765 5.293765 3579722
8.197330 3795817 5.292286 4249395
8.190137 175769 5.286192 2550277
8.189538 601694 5.268644 967226
8.188229 3656370 5.262893 4118560
8.180953 2031604 5.251343 284339
8.163651 3580795 5.246095 2389222
8.146049 3579722 5.234097 1790014
8.138448 1886642 5.233723 4532210
8.133661 1463156 5.229556 1398976
8.121339 396055 5.229428 4458515
8.118028 1666148 5.222529 2703108
8.117552 3791080 5.211002 295021
8.090501 3766821 5.209751 778266
8.090182 4544717 5.204275 4575918
8.061058 3181532 5.200656 4193672
8.056626 275037 5.189159 1868819
8.049946 1901019 5.181183 4531414
8.031444 1369724 5.175534 1810644
8.015399 2101724 5.171135 633504
7.994357 1092236 5.157613 278113
7.992895 4589104 5.152109 913053
7.953161 582466 5.147339 2140820
7.950365 3025800 5.141491 4077176
7.946119 986491 5.134562 3666948
7.938654 119427 5.119373 1458696
7.912267 1199634 5.086894 578469
7.901991 2584135 5.086346 2478733
7.901913 134336 5.076245 4478090
7.872009 3235476 5.076074 394212
7.856586 3360224 5.069647 3798544
7.853398 4416071 5.065019 2380075
7.849326 1499613 5.064775 4097858
7.842665 2231132 5.047201 3937111
7.840925 1584689 5.047099 1990787
7.830890 2783498 5.041625 236526
7.828595 2027399 5.040852 3003946
7.827300 1776758 5.036204 2694157
7.824190 1463233 5.029551 343562
7.819889 2986424 5.023862 1278421
7.818789 1787611 5.000982 2182139
7.797206 3266039
7.792533 2796963
7.765702 3694009
7.758450 2823983
7.758371 1424997
7.733025 3292549
7.720465 1041279
7.716644 1630884
7.716644 1432460
7.716371 3186334
7.706770 1577495
7.704864 1636803
7.703371 338208
7.695460 400463
7.679402 3764525
7.677146 3351827
7.663376 3530302
7.657803 1920844
7.654482 2310927
7.646940 3951029
7.643619 1894860
7.621836 234114
7.619931 996958
7.618076 2991690
7.617793 570133
7.612476 2085013
7.611998 4477271
7.611810 4537664
7.607314 624069
7.597967 3284706
7.594678 3796492
7.593382 1542491
7.592197 2589610
7.586728 258340
7.581309 2066621
7.561068 522119
7.544900 3266709
7.528763 1891880
7.519794 451083
7.515683 1488732
7.511653 3134583
7.508901 1019641
7.495751 3798544
7.494547 1424204
7.490873 2487805
7.462381 997635
7.460958 3022339
7.454897 404910
7.442551 1870545
7.417365 711269
7.403426 2901825
7.403163 4257753
7.399482 4390398
7.389427 1463152
7.387657 1645924
7.386887 4071146
7.386692 2154340
7.383585 4576071
7.369212 1210416
7.366160 4327825
7.361054 1905935
7.357763 2985186
7.354511 1073304
7.353487 3643862 gorA
7.349369 3802075
7.345150 3013817
7.341727 1891862
7.326031 2872320
7.325033 1899172
7.322285 3186712
7.321933 1622574
7.317196 3937478
7.303328 3801838
7.286679 2909413
7.275090 297344
7.262116 3184067
7.250628 2468266
7.243604 1771818
7.241623 660704
7.239981 2066618
7.225812 430229
7.218040 1821298
7.214842 913053
7.205879 1363108
7.200488 3186817
7.199941 4061869
7.192774 152245
7.189691 2247656
7.189646 2031907
7.169296 1608739
7.166196 3264041
7.164901 3537670
7.164361 1355169
7.161849 4135429
7.158511 4609659
7.158345 4603251
7.157984 1424669
7.154651 4197882
7.146990 2484368
7.131932 1635628
7.128199 4503992
7.127618 2589163
7.126613 4000539
7.126184 624075
7.111592 3656143
7.094319 1570121
7.089129 3382980
7.088315 4272252
7.084967 3815409
7.084682 3736218
7.059016 1596481
7.054187 2467192
7.043631 2550928
7.043030 3794682
7.038201 2107606
7.036514 3714616
7.033963 2904154
7.025971 2467751
7.020016 3266917
7.016935 4569233
7.007383 1210391
7.004597 1869417
7.001516 1667650
6.992625 473524
6.988780 3453074
6.983002 1218156
6.976456 4549044
6.972425 1176632
6.963627 892330
6.963456 2479453
6.954221 3766929
6.947626 3170143
6.944492 3186881
6.944447 296404
6.941834 2713358
6.934333 778266
6.911137 1184988
6.896460 3023646
6.889114 418725
6.880512 2516384
6.879146 3635658
6.874548 1790119
6.868349 1565459
6.862728 1214627
6.842962 2813894
6.839638 4477311
6.834346 1877073
6.825954 4335631
6.823845 3755528
6.817580 135459
6.816961 1486214
6.816429 3328029
6.807507 4408869
6.806082 611918
6.789898 3801819
6.785550 4506241
6.783939 2848533
6.782431 1762583
6.769628 324393
6.768182 1868329
6.759838 931365
6.752366 2882429
6.748144 4249208
6.746639 3840601
6.742482 1296679
6.736696 2181688
6.733967 2311266
6.731837 3649208
6.726057 4502486
6.721895 940121
6.720754 2231829
6.718947 3666948
6.702053 1097062
6.701003 3693719
6.699837 2735179
6.697884 2940629
6.686639 4285912
6.683417 728174
6.679473 750780
6.668102 3216803
6.666729 3603212
6.666044 4041905
6.654345 2651668
6.654242 1751843
6.648888 4118560
6.642246 1084122
6.637627 1332956
6.613292 2905292
6.612504 1810871
6.611967 3621575
6.608589 1195865
6.607258 4535781
6.603956 404578
6.600526 84085
6.593484 4390393
6.587609 569552
6.585708 651347
6.575638 651352
6.568704 1891876
6.566909 3505283
6.564044 1802963
6.561834 4071267
6.561079 4621705
6.547359 1875564
6.546538 1868828
6.541533 1702592
6.541079 3755850
6.518595 1617165
6.517711 3453613
6.516567 735263
6.514141 67323
6.514047 1653711
6.513425 237218
6.498794 4406849
6.496043 3801889
6.495936 1091875
6.479809 4097858
6.479715 3214188
6.479259 1159487
6.479243 2588896
6.469181 2882298
6.467385 991743
6.462868 1871211
6.462015 2753070
6.439476 451065
6.438914 2992758
6.431522 2492771
6.430802 651356
6.428417 4473959
6.426766 781242
6.416039 2288220
6.410361 1994991
6.408858 2104330
6.396431 2453884
6.394003 39939
6.389127 3666988
6.387578 2294797
6.386145 1842419
6.381636 1219640
6.378045 1591880
6.377823 167430
6.376273 3467672
6.376150 2857749
6.368901 1554444
6.357240 4575918
6.355363 3898285
6.353148 902231
6.347965 50270
6.344701 3453102
6.342943 4380089
6.336118 4550188
6.331782 1745160
6.326525 1876918
6.319624 1265260
6.319620 6524
6.315486 1095137
6.298292 997648
6.296243 84064
6.295909 2940379
6.291180 201529
6.290403 3799686
6.288905 3983716
6.273833 1635125
6.269086 3983828
6.258302 1216183
6.255565 3582389
6.248655 2468437
6.247408 3580761
6.247302 3505145
6.246863 1524819
6.244131 2010442
6.228169 1622712
6.209796 4371970
6.196773 284468
6.191188 4638247
6.190827 1153970
6.189391 3223648
6.186497 4084582
6.181736 3886023
6.180116 2482665
6.174385 2196254
6.164956 229589
6.164415 1958035
6.157944 2106259
6.156031 2031869
6.155432 2275725
6.155208 3738639
6.152318 3979064
6.152046 3767299
6.150483 3478889
6.149730 142665
6.148856 2166395
6.140563 85369
6.137056 966377
6.133328 2066606
6.131819 2479114
6.130210 2068518
6.127503 848283
6.121269 4532232
6.116950 2597739
6.116727 4090656
6.115622 2562005
6.107021 584130
6.104780 389960
6.097910 2468735
6.085397 4302041
6.084697 3649391
6.083834 997046
6.081662 2291428
6.080484 3766329
6.074025 3834402
6.072032 3796298
6.068802 2066564
6.067044 3896835
6.062898 1270740
6.055454 2251664
6.052475 2478733
6.050194 3673306
6.047209 2944573
6.045806 2698621
6.045373 678032
6.043362 1209574
6.034282 2723823
6.033832 837220
6.030598 3266026
6.022342 4638282
6.019720 1994906
6.006696 575505
6.006109 2492545
6.001953 678151
5.999675 4263319
5.998871 2066334
5.993774 1718915
5.986493 614948
5.986184 2031662
5.979337 3254293
5.977649 1228504
5.976583 1331770
5.974505 3802081
5.973790 3411217
5.968035 4266019
5.961717 2597748
5.960805 1182772
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5.940322 1614542
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5.938040 582066
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5.919994 279539
5.916021 3270417
5.906318 3801927
5.906266 3050332
5.900679 3097131
5.900063 829888
5.897173 1810644
5.884433 4248785
5.884218 3755546
5.882890 4060356
5.882624 2531527
5.879599 1102724
5.878590 4550475
5.877638 2703108
5.876041 3582383
5.873503 2246055
5.873184 2491290
5.871570 858341
5.869192 1984580
5.868568 1078246
5.868027 2267602
5.865446 1244567
5.864170 2984900
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5.851120 3898426
5.845763 1544035
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5.772909 3571123
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5.755363 1244494
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5.749786 1883519
5.736464 3630948
5.727666 4076299
5.719491 1298294
5.716604 4538772
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5.710397 1570362
5.704796 659488
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5.695477 2758883
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5.678305 2995675
5.678305 2068255
5.678305 1467226
5.678305 380522
5.677255 431460
5.671724 2857926
5.664753 1222467
5.663457 2992144
5.661082 1525672
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5.651854 570934
5.648605 234337
5.642681 1584657
5.642341 80307
5.635319 4174813
5.632394 645846
5.619527 457205
5.608022 2925927
5.607835 1398775
5.602261 1850993
5.599780 890076
5.596919 576022
5.596003 1211956
5.594511 3764543
5.591840 150396
5.574913 2023387
5.573743 403620
5.572819 660641
5.568565 3755537
5.566717 2738056
5.557873 2319367
5.555908 2627179
5.555626 526775
5.553935 29239
5.551413 1292607
5.550125 4249067
5.536461 4358682
5.527954 578754
5.523477 4044396
5.518289 4358307
5.503689 157054
5.501620 431327
5.501521 3841615
5.494501 1581921
5.489695 4488573
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5.469099 636134
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5.465755 1050381
5.465001 1410918
5.463553 4161944
5.462968 1299182
5.460339 2468264
5.457867 651374
5.443284 1594070
5.441934 4633087
5.441309 234105
5.440431 4474250
5.438005 3595511
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5.424399 2104515
5.418214 3582380
5.414732 3652493
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5.408957 2784276
5.399297 384094
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5.398808 4406272
5.397038 3531476
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5.389711 2380075
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5.371012 4220112
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5.322896 3800044
5.320106 999762
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5.286754 3719858
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5.275720 1064495
5.266989 1558970
5.263906 4044280
5.262058 3851527
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5.246709 3986699
5.245278 4532136
5.244733 89131
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5.236567 1189696
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5.233111 2485856
5.228023 4019570
5.227592 2231874
5.222192 1787605
5.221773 4576080
5.218544 246262
5.213192 578866
5.206821 4436235
5.206180 1090612
5.201600 3426863
5.198468 820000
5.197049 1236074
5.193250 4000432
5.190465 936600
5.184428 2913529
5.181543 4542252
5.179476 2468194
5.170822 656520
5.169135 2272409
5.166943 121063
5.165555 3497068
5.165246 3755524
5.163018 583515
5.158111 250537
5.157781 557186
5.157297 3637532
5.156642 582693
5.156084 1502943
5.154075 4000737
5.153837 3708354
5.146428 3066901
5.137880 3799681
5.134028 2453710
5.131094 4230807
5.128912 1107740
5.123088 2732269
5.120330 1769721
5.118904 2757906
5.117741 1736104
5.111924 3724893
5.109104 238874
5.108388 4084475
5.105622 2520512
5.101970 563075
5.101939 4380076
5.100727 4388617
5.100086 633504
5.096494 3723962
5.095936 3787844
5.090342 3337933
5.087095 3473888
5.082467 4258964
5.078155 3419542
5.074757 3629665
5.069410 324384
5.068995 3579864
5.066612 1104693
5.063253 1970308
5.061666 2042503
5.060883 3077311
5.059746 1578258
5.057073 528588
5.054709 1528114
5.050718 1639896
5.050241 4468005
5.049061 1092969
5.040725 578936
5.038053 621452
5.031571 2310918
5.025984 1525693
5.024608 562089
5.022335 2802847
5.021703 4143231
5.016759 4341996
5.014167 1856892
5.013955 3549680
5.012672 46515
5.011580 4291781
5.004746 2915956
5.003718 1063805
5.003421 3738630
5.003243 2760356
5.000754 384376
5.000562 3583356
Schneider Lab
origin: 2001 May 31
updated: 2001 June 11