Comparison of 18 and 32 site OxyR models


2001 May 9 by Tom Schneider

18 Oxidized OxyR binding sites
9 OxyR binding sites and their complements

32 Oxidized OxyR binding sites
16 OxyR binding sites and their complements

18 Oxidized OxyR binding sites compared to 32 Oxidized
OxyR binding sites by alternating the sequence logo images.
This compares the OxyR models (18 and 32 sites) by Pete Lemkin's flicker method. Unfortunately the right part gets cut off by the program that converts from postscript to gif, but fortunately it is redundant with the left edge. The flicker shows that there is no major change, but rather little changes throughout the model, as one might expect. Note how the error bar at position +7 changes with the number of sites in the model. (Other positions change too, but they also shift, making it hard to see the effect.)