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Bibliography

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Allikmets, R., Wasserman, W. W., Hutchinson, A., Smallwood, P., Nathans, J., Rogan, P. K., Schneider, T. D. & Dean, M. (1998).
Organization of the ABCR gene: analysis of promoter and splice junction sequences.
Gene, 215, 111-122.
http://www.lecb.ncifcrf.gov//paper/abcr/.

Cover & Thomas, 1991

Cover, T. M. & Thomas, J. A. (1991).
Elements of Information Theory.
John Wiley & Sons, Inc., N. Y.

Gappmair, 1999

Gappmair, W. (1999).
Claude E. Shannon: The 50th anniversary of information theory.
IEEE Communications Magazine, 37 (4), 102-105.

Hartz et al., 1988

Hartz, D., McPheeters, D. S., Traut, R. & Gold, L. (1988).
Extension inhibition analysis of translation initiation complexes.
Meth. Enzym. 164, 419-425.

Hengen et al., 1997

Hengen, P. N., Bartram, S. L., Stewart, L. E. & Schneider, T. D. (1997).
Information analysis of Fis binding sites.
Nucl. Acids Res. 25 (24), 4994-5002.
https://alum.mit.edu/www/toms/paper/fisinfo/.

Herman & Schneider, 1992

Herman, N. D. & Schneider, T. D. (1992).
High information conservation implies that at least three proteins bind independently to F plasmid incD repeats.
J. Bact. 174, 3558-3560.

Kahn et al., 1998

Kahn, S. G., Levy, H. L., Legerski, R., Quackenbush, E., Reardon, J. T., Emmert, S., Sancar, A., Li, L., Schneider, T. D., Cleaver, J. E. & Kraemer, K. H. (1998).
Xeroderma Pigmentosum Group C splice mutation associated with mutism and hypoglycinemia - A new syndrome?
Journal of Investigative Dermatology, 111, 791-796.

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Piccirilli, J. A., Krauch, T., Moroney, S. E. & Benner, S. A. (1990).
Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet.
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Rogan et al., 1998

Rogan, P. K., Faux, B. M. & Schneider, T. D. (1998).
Information analysis of human splice site mutations.
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Rudd & Schneider, 1992

Rudd, K. E. & Schneider, T. D. (1992).
Compilation of E. coli ribosome binding sites.
In A Short Course in Bacterial Genetics: A Laboratory Manual and Handbook for Escherichia coli and Related Bacteria, (Miller, J. H., ed.), pp. 17.19-17.45, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

Schneider, 1991a

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Theory of molecular machines. I. Channel capacity of molecular machines.
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Schneider, 1991b

Schneider, T. D. (1991b).
Theory of molecular machines. II. Energy dissipation from molecular machines.
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Schneider, 1994

Schneider, T. D. (1994).
Sequence logos, machine/channel capacity, Maxwell's demon, and molecular computers: a review of the theory of molecular machines.
Nanotechnology, 5, 1-18.
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Schneider, 1996

Schneider, T. D. (1996).
Reading of DNA sequence logos: prediction of major groove binding by information theory.
Meth. Enzym. 274, 445-455.
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Schneider, T. D. (1997a).
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Schneider, T. D. (1997b).
Sequence walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences.
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Schneider, T. D. & Stephens, R. M. (1990).
Sequence logos: a new way to display consensus sequences.
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Schneider, T. D. & Stormo, G. D. (1989).
Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique.
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Schneider, T. D., Stormo, G. D., Gold, L. & Ehrenfeucht, A. (1986).
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A mathematical theory of communication.
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Communication in the presence of noise.
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Shultzaberger & Schneider, 1999

Shultzaberger, R. K. & Schneider, T. D. (1999).
Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepancies between natural selection and SELEX.
Nucleic Acids Res, 27 (3), 882-887.
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IEEE Press, Piscataway, NJ.

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Staden, R. (1984).
Computer methods to locate signals in nucleic acid sequences.
Nucl. Acids Res. 12, 505-519.

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Stephens, R. M. & Schneider, T. D. (1992).
Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites.
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Information Content and Free Energy in DNA-Protein Interactions.
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Thermostatics and Thermodynamics.
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Tribus & McIrvine, 1971

Tribus, M. & McIrvine, E. C. (1971).
Energy and information.
Sci. Am. 225 (3), 179-188.
(Note: the table of contents in this volume incorrectly lists this as volume 224).

Zheng et al., 1999

Zheng, M., Doan, B., Schneider, T. D. & Storz, G. (1999).
OxyR and SoxRS Regulation of fur.
J. Bact, 181, 4639-4643.