frame program

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• Pascal source code: frame.p (wget instructions)
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• MacOS binary: frame
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Documentation for the frame program is below, with links to related programs in the "see also" section.

{   version = 1.18; (* of frame.p 2016 Jan 24}

(* begin module describe.frame *)
(*
name
      frame: evaluator of potential reading frames

synopsis
      frame(test: in, norm: in, result: out, output: out)

files
      test: encoded vectors of the sequences to be tested for reading frames
      norm: encoded vector of the sequences used as the standard for testing
      result: the results of the tests; each sequence from test is evaluated
         for each of the three possible reading frames
      output: for messages to the user

description
      this calculates correlation coefficients between the standard and each
      of the three possible frames of the test sequences.  the sequences must
      be encoded so that each of the oligos (of whatever length is desired)
      are counted in each of the three frames.

examples
      the files framet and framen are examples of test and norm

documentation
      delman.use.frame

see also
      encode.p

author
      gary d. stormo

bugs
      none known
*)
(* end module describe.frame *)
{This manual page was created by makman 1.45}