* rseq 5.35 rsequence calculated from encoded sequences from: * encode 1.33; encoding of sequences in * * 95/01/13 14:06:03, 95/01/13 13:57:47, rbs1055: pure rbs listed in Miller book * * genomic probabilities from: * the composition file is empty. * (equal mononucleotides assumed) * the genomic composition used is: a = 1, c = 1, g = 1, t = 1 * * genomic information, hg: 2.00000 bits/base * * -21 18 is the range * * l position in aligned set * a..t number of each base at the position l * rs(l) rsequence(l) * rs rsequence, running sum of rs(l) * var(hnb) variance of hnb * sum-var running sum of var(hnb) * n(l) number of sequence examples at l * e(hnb) expectation of hnb * f flag for calculation of e(hnb) and var(hnb): * e = exact, a = approximation * * l a c g t rs(l) rs var(hnb) sum-var n(l) e(hnb) f -21 308 249 170 328 0.03936 0.03936 4.2075e-06 4.2075e-06 1055 1.99795 a -20 348 222 217 268 0.02551 0.06487 4.2075e-06 8.4150e-06 1055 1.99795 a -19 348 217 186 304 0.04218 0.10705 4.2075e-06 1.2623e-05 1055 1.99795 a -18 321 215 203 316 0.02952 0.13657 4.2075e-06 1.6830e-05 1055 1.99795 a -17 361 217 198 279 0.03881 0.17538 4.2075e-06 2.1038e-05 1055 1.99795 a -16 379 218 181 277 0.05443 0.22981 4.2075e-06 2.5245e-05 1055 1.99795 a -15 353 190 229 283 0.03645 0.26626 4.2075e-06 2.9453e-05 1055 1.99795 a -14 356 189 266 244 0.03495 0.30121 4.2075e-06 3.3660e-05 1055 1.99795 a -13 391 182 241 241 0.05667 0.35788 4.2075e-06 3.7868e-05 1055 1.99795 a -12 368 137 350 200 0.10260 0.46047 4.2075e-06 4.2075e-05 1055 1.99795 a -11 363 108 476 108 0.27708 0.73755 4.2075e-06 4.6283e-05 1055 1.99795 a -10 351 83 511 110 0.33450 1.07205 4.2075e-06 5.0490e-05 1055 1.99795 a -9 333 78 540 104 0.37096 1.44301 4.2075e-06 5.4698e-05 1055 1.99795 a -8 367 103 443 142 0.22522 1.66823 4.2075e-06 5.8905e-05 1055 1.99795 a -7 373 129 365 188 0.12369 1.79192 4.2075e-06 6.3113e-05 1055 1.99795 a -6 346 163 259 287 0.04583 1.83775 4.2075e-06 6.7320e-05 1055 1.99795 a -5 360 207 224 264 0.03282 1.87058 4.2075e-06 7.1528e-05 1055 1.99795 a -4 367 218 198 272 0.04077 1.91135 4.2075e-06 7.5735e-05 1055 1.99795 a -3 428 195 257 175 0.09349 2.00483 4.2075e-06 7.9943e-05 1055 1.99795 a -2 283 298 152 322 0.04828 2.05311 4.2075e-06 8.4150e-05 1055 1.99795 a -1 303 309 173 270 0.03122 2.08433 4.2075e-06 8.8358e-05 1055 1.99795 a 0 971 0 71 13 1.54761 3.63194 4.2075e-06 9.2566e-05 1055 1.99795 a 1 0 0 0 1055 1.99795 5.62989 4.2075e-06 9.6773e-05 1055 1.99795 a 2 0 0 1054 1 1.98706 7.61695 4.2075e-06 1.0098e-04 1055 1.99795 a 3 491 162 244 158 0.17055 7.78750 4.2075e-06 1.0519e-04 1055 1.99795 a 4 342 333 176 204 0.05660 7.84410 4.2075e-06 1.0940e-04 1055 1.99795 a 5 336 205 162 352 0.06951 7.91361 4.2075e-06 1.1360e-04 1055 1.99795 a 6 443 211 285 116 0.14761 8.06122 4.2075e-06 1.1781e-04 1055 1.99795 a 7 456 211 145 243 0.12911 8.19033 4.2075e-06 1.2202e-04 1055 1.99795 a 8 310 216 234 295 0.01432 8.20465 4.2075e-06 1.2623e-04 1055 1.99795 a 9 378 244 229 204 0.04211 8.24676 4.2075e-06 1.3043e-04 1055 1.99795 a 10 334 247 130 344 0.08283 8.32959 4.2075e-06 1.3464e-04 1055 1.99795 a 11 342 224 183 306 0.04012 8.36971 4.2075e-06 1.3885e-04 1055 1.99795 a 12 360 243 265 187 0.03765 8.40736 4.2075e-06 1.4306e-04 1055 1.99795 a 13 351 234 126 344 0.09450 8.50186 4.2075e-06 1.4726e-04 1055 1.99795 a 14 281 252 199 323 0.01944 8.52130 4.2075e-06 1.5147e-04 1055 1.99795 a 15 341 281 249 184 0.03189 8.55319 4.2075e-06 1.5568e-04 1055 1.99795 a 16 311 226 144 374 0.07974 8.63293 4.2075e-06 1.5989e-04 1055 1.99795 a 17 265 246 215 329 0.01559 8.64853 4.2075e-06 1.6409e-04 1055 1.99795 a 18 305 268 303 179 0.02702 8.67554 4.2075e-06 1.6830e-04 1055 1.99795 a * rsequence = 8.67554 +/- 0.01297 bits/site